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Genomic Analysis

RNA-seq

  • Quality control
  • Sequence alignment
  • Differential gene expression
  • GSEA/gene ontology
  • Allele-specific expression
  • Isoform-level analysis
  • RNA editing analysis
  • CAGE analysis
  • Small RNA analysis (e.g., microRNAs)
  • Epigenetics/ChIP-Seq

  • DNAse-seq
  • FAIRE-seq
  • Peak calling, hidden-markov models
  • Mapping DNA binding proteins
  • Novel transcriptor factor binding sites
  • Motif discovery
  • Exome analysis

  • Raw Reads: Quality and Statistics
  • Filtered Reads: Quality and Statistics
  • Alignment of reads against Reference Genome: mapping statistics and graphs
  • SNPs and InDels calling
  • SNPs and InDels annotation
  • Gene Ontology
  • Genome-wide association studies

  • Imputing genotypes
  • Association analysis
  • Genomic inflation
  • Mixed linear models
  • cis/trans interactions
  • Microbial Genomics; environmental genetics

  • 16S rRNA analysis
  • Taxonomy determination
  • Meta-genome assembly
  • alpha/beta diversity, Shannon index
  • Quantitative trait loci

  • Genotype
  • Association analysis
  • Meta-analysis
  • Adjustment of covariates
  • Adjustment of batch effects
  • Multivariate linear regression
  • Graphics & visualization

  • Circos plots
  • Chromosome-wide plots
  • LocusZoom plots
  • Scatter plots
  • Amplicon analysis

  • Raw Reads: Quality and Statistics
  • Filtered Reads: Quality and Statistics
  • OTUs (Operational Taxonomic Units) identification
  • Taxonomic and phylogenetic analysis
  • Diversity and rarefaction analysis
  • Genome Resequencing

  • Raw Reads: Quality and Statistics
  • Filtered Reads: Quality and Statistics
  • Alignment of reads against Reference Genome: mapping statistics and graphs
  • Variant (SNPs, InDels, Structural Variants etc.) detection
  • Variant annotation
  • Identification of novel variants
  • Comparative analysis (more than 2 samples)
  • Please submit a detailed description of your project. We will provide you with a customized project plan to meet your research requests. You can also send emails directly to info@scientificbiominds.in for inquiries. Please complete and submit this enquiry form.

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